TY - JOUR T1 - Common garden experiments disentangle plant genetic and environmental contributions to ectomycorrhizal fungal community structure. JF - New Phytologist Y1 - 2018 A1 - Patterson, A.M. A1 - Flores-Rentería, L. A1 - A.V. Whipple A1 - Whitham, T.G. A1 - Gehring, C.A. AB -
The interactions among climate change, plant genetic variation and fungal mutualists are poorly understood, but probably important to plant survival under drought. We examined these interactions by studying the ectomycorrhizal fungal (EMF) communities of pinyon pine seedlings (Pinus edulis) planted in a wildland ecosystem experiencing two decades of climate change‐related drought We established a common garden containing P. edulis seedlings of known maternal lineages (drought tolerant, DT; drought intolerant, DI), manipulated soil moisture and measured EMF community structure and seedling growth. Three findings emerged: EMF community composition differed at the phylum level between DT and DI seedlings, and diversity was two‐fold greater in DT than in DI seedlings. EMF communities of DT seedlings did not shift with water treatment and were dominated by an ascomycete, Geopora sp. By contrast, DI seedlings shifted to basidiomycete dominance with increased moisture, demonstrating a lineage by environment interaction. DT seedlings grew larger than DI seedlings in high (28%) and low (50%) watering treatments. These results show that inherited plant traits strongly influence microbial communities, interacting with drought to affect seedling performance. These interactions and their potential feedback effects may influence the success of trees, such as P. edulis, in future climates.
VL - 221 UR - https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.15352 IS - 1 ER - TY - JOUR T1 - High temperature at lower elevation sites fails to promote acclimation or adaptation to heat stress during pollen germination. JF - Frontiers in Plant Science Y1 - 2018 A1 - Flores-Rentería, L. A1 - Whipple, A.V., A1 - Benally, G.J. A1 - Patterson, A.M. A1 - Canyon, B. A1 - Gehring, C.A. AB -High temperatures associated with climate change are expected to be detrimental for aspects of plant reproduction, such as pollen viability. We hypothesized that (1) higher peak temperatures predicted with climate change would have a minimal effect on pollen viability, while high temperatures during pollen germination would negatively affect pollen viability, (2) high temperatures during pollen dispersal would facilitate acclimation to high temperatures during pollen germination, and (3) pollen from populations at sites with warmer average temperatures would be better adapted to high temperature peaks. We tested these hypotheses in Pinus edulis, a species with demonstrated sensitivity to climate change, using populations along an elevational gradient. We tested for acclimation to high temperatures by measuring pollen viability during dispersal and germination stages in pollen subjected to 30, 35, and 40°C in a factorial design. We also characterized pollen phenology and measured pollen heat tolerance using trees from nine sites along a 200 m elevational gradient that varied 4°C in temperature. We demonstrated that this gradient is biologically meaningful by evaluating variation in vegetation composition and P. edulis performance. Male reproduction was negatively affected by high temperatures, with stronger effects during pollen germination than pollen dispersal. Populations along the elevational gradient varied in pollen phenology, vegetation composition, plant water stress, nutrient availability, and plant growth. In contrast to our hypothesis, pollen viability was highest in pinyons from mid-elevation sites rather than from lower elevation sites. We found no evidence of acclimation or adaptation of pollen to high temperatures. Maximal plant performance as measured by growth did not occur at the same elevation as maximal pollen viability. These results indicate that periods of high temperature negatively affected sexual reproduction, such that even high pollen production may not result in successful fertilization due to low germination. Acquired thermotolerance might not limit these impacts, but pinyon could avoid heat stress by phenological adjustment of pollen development. Higher pollen viability at the core of the distribution could be explained by an optimal combination of biotic and abiotic environmental factors. The disconnect between measures of growth and pollen production suggests that vigor metrics may not accurately estimate reproduction.
VL - 9 UR - https://www.frontiersin.org/articles/10.3389/fpls.2018.00536/full ER - TY - JOUR T1 - The role of hybridization during ecological divergence of southwestern white pine (Pinus strobiformis) and limber pine (P. flexilis) JF - Molecular Ecology Y1 - 2018 A1 - Mitra Menon A1 - Justin C. Bagley A1 - Christopher J. Friedline A1 - Amy V. Whipple A1 - Anna W. Schoettle A1 - Alejandro Leal-Saenz A1 - Christian Wehenkel A1 - Francisco Molina-Freaner A1 - Lluvia Flores-Renterıa A1 - M. Socorro Gonzalez-Elizondo A1 - Richard A. Sniezko A1 - Samuel A. Cushman A1 - Kristen M. Waring A1 - Andrew J. Eckert KW - conifers KW - ecological speciation KW - extrinsic barriers KW - hybrid zone KW - introgression KW - population genomics AB -Interactions between extrinsic factors, such as disruptive selection and intrinsic factors,
such as genetic incompatibilities among loci, often contribute to the maintenance
of species boundaries. The relative roles of these factors in the establishment
of reproductive isolation can be examined using species pairs characterized by gene
flow throughout their divergence history. We investigated the process of speciation
and the maintenance of species boundaries between Pinus strobiformis and Pinus
flexilis. Utilizing ecological niche modelling, demographic modelling and genomic
cline analyses, we illustrated a divergence history with continuous gene flow. Our
results supported an abundance of advanced generation hybrids and a lack of loci
exhibiting steep transition in allele frequency across the hybrid zone. Additionally,
we found evidence for climate-associated variation in the hybrid index and niche
divergence between parental species and the hybrid zone. These results are consistent
with extrinsic factors, such as climate, being an important isolating mechanism.
A build-up of intrinsic incompatibilities and of coadapted gene complexes is also
apparent, although these appear to be in the earliest stages of development. This
supports previous work in coniferous species demonstrating the importance of extrinsic factors in facilitating speciation. Overall, our findings lend support to the
hypothesis that varying strength and direction of selection pressures across the long
lifespans of conifers, in combination with their other life history traits, delays the
evolution of strong intrinsic incompatibilities.
Waring, K, Cushman, S, Eckert A, Flores Renteria, L, Sniezko, R, Still,C, Wehenkel, C, Whipple, A, and Wing, M. 2017. A holistic approach to genetic conservation in Pinus strobiformis. International Scientific Conference on Genetics of Populations: Progress and Perspectives, commemorating the 80th birthday of Academician Yury P. Altukhov and dedicated to the 45th Anniversary of the Laboratory of Population Genetics named after Yu. P. Altukhov, 17-21 April 2017, Zvenogorod Biological Station, Russia.
JF - International Scientific Conference on Genetics of Populations Progress and Perspectives commemorating the 80th birthday of Academician Altukhov and dedicated to the 45th Anniversary of the Laboratory of Population Genetics named after Yu P Biological Sta T3 - International Scientific Conference on Genetics of Populations Progress and Perspectives commemorating the 80th birthday of Academician Altukhov and dedicated to the 45th Anniversary of the Laboratory of Population Genetics named after Yu P Biological Sta CY - Zvenogorod Biological Station, Russia VL - 2017 N1 - [Original String]:Waring, K, Cushman, S, Eckert A, Flores Renteria, L, Sniezko, R, Still, C, Wehenkel, C, Whipple, A, and Wing, M. 2017. A holistic approach to genetic conservation in Pinus strobiformis. International Scientific Conference on Genetics of Populations: Progress and Perspectives, commemorating the 80th birthday of Academician Yury P. Altukhov and dedicated to the 45th Anniversary of the Laboratory of Population Genetics named after Yu. P. Altukhov, 17-21 April 2017, Zvenogorod Biological Station, Russia. ER - TY - CONF T1 - Southwestern white pine performance across an elevational gradient. T2 - National Silviculture Workshop Y1 - 2017 A1 - DaBell,J A1 - K Waring A1 - TE Kolb A1 - AV Whipple JF - National Silviculture Workshop T3 - National Silviculture Workshop CY - Flagstaff, Arizona, USA ER - TY - CONF T1 - Southwestern white pine performance across an elevational gradient. T2 - North American Forest Ecology Workshop Y1 - 2017 A1 - DaBell,J A1 - K Waring A1 - TE Kolb A1 - AV Whipple AB -DaBell, J., Waring, K., Kolb, T. and Whipple, A. 2017. Southwesternwhite pine performance across an elevational gradient. North American Forest Ecology Workshop, June 18-22, 2017, Edmonton, Canada. Also presented at the National Silviculture Workshop, July 18-20, 2017, Flagstaff, AZ.
JF - North American Forest Ecology Workshop T3 - North American Forest Ecology Workshop CY - Edmonton Canada VL - 2017 N1 - [Original String]:DaBell, J., Waring, K., Kolb, T. and Whipple, A. 2017. Southwestern white pine performance across an elevational gradient. North American Forest Ecology Workshop, June 18-22, 2017, Edmonton, Canada. Also presented at the National Silviculture Workshop, July 18-20, 2017, Flagstaff, AZ. ER - TY - CONF T1 - Support of distributed ecological experiments via closed-loop environmental control T2 - 2017 IEEE Conference on Technologies for Sustainability (SusTech), Y1 - 2017 A1 - J.D. Knapp A1 - M. Middleton A1 - P.L. Heinrich A1 - A.V. Whipple A1 - P.G. Flikkema KW - closed-loop KW - distributed experiments KW - Ecology KW - environmental control KW - SEGA KW - technology AB -Improved understanding of the effects of climate and weather patterns on plant survival and growth is critical for improving management of wildland, rangeland, and crop ecosystems. The Southwest Experimental Garden Array (SEGA) is a distributed research instrument comprising of an array of 10 common gardens across an elevational gradient in Northern Arizona. SEGA's cyber infrastructure facilitates monitoring and control of soil moisture at experimental plots using drip irrigation and wireless sensor/actuator nodes. This paper describes development of software-based workflows for the sensing and control of soil moisture conditions across experimental plots and gardens with different temperature and rainfall regimes, and the necessary hardware and software infrastructure to support this capability.
JF - 2017 IEEE Conference on Technologies for Sustainability (SusTech), PB - IEEE SusTech CY - Phoenix, AZ UR - https://ieeexplore.ieee.org/document/8333478/ ER - TY - JOUR T1 - Tree genetics defines fungal partner communities that may confer drought tolerance. JF - PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES Y1 - 2017 A1 - Gehring, C.A. A1 - Sthultz, C.M. A1 - Flores-Rentería, L. A1 - A.V. Whipple A1 - T.G. Whitham AB -Plant genetic variation and soil microorganisms are individually known to influence plant responses to climate change, but the interactive effects of these two factors are largely unknown. Using long-term observational studies in the field and common garden and greenhouse experiments of a foundation tree species (Pinus edulis) and its mutualistic ectomycorrhizal fungal (EMF) associates, we show that EMF community composition is under strong plant genetic control. Seedlings acquire the EMF community of their seed source trees (drought tolerant vs. drought intolerant), even when exposed to inoculum from the alternate tree type. Drought-tolerant trees had 25% higher growth and a third the mortality of drought-intolerant trees over the course of 10 y of drought in the wild, traits that were also observed in their seedlings in a common garden. Inoculation experiments show that EMF communities are critical to drought tolerance. Drought-tolerant and drought-intolerant seedlings grew similarly when provided sterile EMF inoculum, but drought-tolerant seedlings grew 25% larger than drought-intolerant seedlings under dry conditions when each seedling type developed its distinct EMF community. This demonstration that particular combinations of plant genotype and mutualistic EMF communities improve the survival and growth of trees with drought is especially important, given the vulnerability of forests around the world to the warming and drying conditions predicted for the future.
VL - 114 UR - https://www.pnas.org/content/114/42/11169 IS - 42 ER - TY - CONF T1 - Collaborative research for sustainable management of southwestern white pine. T2 - Society of American Foresters National Convention Y1 - 2016 A1 - K Waring A1 - Cushman,S A1 - Eckert,A A1 - L Flores-Renteria A1 - Lintz,H A1 - R Sniezko A1 - Still,C A1 - Wehenkel,C A1 - AV Whipple A1 - Wing,M AB -
Waring, K., Cushman, S., Eckert, A., Flores-Renteria, L., Lintz, H.,Sniezko, R., Still, C., Wehenkel, C., Whipple, A., and Wing, M. 2016. Collaborative research for sustainable management of southwestern white pine. Society of American Foresters National Convention, November 2-5, 2016, Madison, WI.
Whipple, A., and Wing, M. 2016. Collaborative research for sustainablemanagement of southwestern white pine. Society of American Foresters National Convention, November 2-5, 2016, Madison, WI.
JF - Society of American Foresters National Convention T3 - Society of American Foresters National Convention CY - Madison, Wisconsin, USA N1 - [Original String]:Whipple, A., and Wing, M. 2016. Collaborative research for sustainable management of southwestern white pine. Society of American Foresters National Convention, November 2-5, 2016, Madison, WI. ER - TY - JOUR T1 - Epigenetic Inheritance across the Landscape. JF - Frontiers in genetics Y1 - 2016 A1 - Whipple,Amy V A1 - Holeski,Liza M AB - The study of epigenomic variation at the landscape-level in plants may add important insight to studies of adaptive variation. A major goal of landscape genomic studies is to identify genomic regions contributing to adaptive variation across the landscape. Heritable variation in epigenetic marks, resulting in transgenerational plasticity, can influence fitness-related traits. Epigenetic marks are influenced by the genome, the environment, and their interaction, and can be inherited independently of the genome. Thus, epigenomic variation likely influences the heritability of many adaptive traits, but the extent of this influence remains largely unknown. Here, we summarize the relevance of epigenetic inheritance to ecological and evolutionary processes, and review the literature on landscape-level patterns of epigenetic variation. Landscape-level patterns of epigenomic variation in plants generally show greater levels of isolation by distance and isolation by environment then is found for the genome, but the causes of these patterns are not yet clear. Linkage between the environment and epigenomic variation has been clearly shown within a single generation, but demonstrating transgenerational inheritance requires more complex breeding and/or experimental designs. Transgenerational epigenetic variation may alter the interpretation of landscape genomic studies that rely upon phenotypic analyses, but should have less influence on landscape genomic approaches that rely upon outlier analyses or genome-environment associations. We suggest that multi-generation common garden experiments conducted across multiple environments will allow researchers to understand which parts of the epigenome are inherited, as well as to parse out the relative contribution of heritable epigenetic variation to the phenotype. VL - 7 UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=27826318&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. ER - TY - JOUR T1 - A robust method to determine historical annual cone production among slow-growing conifers. JF - Canadian Journal of Forest Research Y1 - 2016 A1 - Redmond,M A1 - Weisberg,P A1 - Cobb,NS A1 - CA Gehring A1 - AV Whipple A1 - TG Whitham VL - 398 N1 - [Original String]:Redmond, M., Weisberg, P., Cobb, N. S., Gehring, C. A., Whipple, A. V., & Whitham, T. G. (2016). A robust method to determine historical annual cone production among slow-growing conifers. Canadian Journal of Forest Research, 398, 1-6. ER - TY - CONF T1 - Southwestern white pine seedling tolerances to a changing climate: early results from common gardens across an elevational gradient. T2 - Society of American Foresters National Convention Y1 - 2016 A1 - DaBell,J A1 - K Waring A1 - TE Kolb A1 - AV Whipple A1 - Madison,WI JF - Society of American Foresters National Convention T3 - Society of American Foresters National Convention CY - Madison, Wisconsin, USA VL - 2016 N1 - [Original String]:DaBell, J., Waring, K., Kolb, T., and Whipple, A. 2016. Southwestern white pine seedling tolerances to a changing climate: early results from common gardens across an elevational gradient. Society of American Foresters National Convention, November 2-5, 2016, Madison, WI. ER - TY - CONF T1 - Sustaining southwestern white pine by combining experimental work and genomic tools. Y1 - 2016 A1 - Castilla,AR A1 - R Sniezko A1 - K Waring A1 - Cushman,S A1 - Eckert,A.J A1 - Flores,L A1 - Still,C A1 - Wehenkel,C A1 - Whipple,A A1 - Wing,M A1 - TE Kolb A1 - Goodrich,B.A. ER - TY - CONF T1 - October). VARIATION IN STOMATAL TRAITS ASSOCIATED WITH DROUGHT TOLERANT AND INTOLERANT PINYON PINE (PINUS EDULIS). T2 - Research Experiences for Undergraduates Symposium (REUS). National Science Foundation. Y1 - 2015 A1 - Vecenti,F A1 - AV Whipple A1 - CA Gehring AB -Vecenti, F., Whipple, A. V., & Gehring, C. A. (2015, October).VARIATION IN STOMATAL TRAITS ASSOCIATED WITH DROUGHT TOLERANT AND INTOLERANT PINYON PINE (PINUS EDULIS). 2015 Research Experiences for Undergraduates Symposium (REUS). National Science Foundation, Arlington, VA: Council on Undergraduate Research.
JF - Research Experiences for Undergraduates Symposium (REUS). National Science Foundation. T3 - Research Experiences for Undergraduates Symposium (REUS). National Science Foundation, Council on Undergraduate Research. PB - National Science Foundation CY - Arlington, Virginia, USA N1 - [Original String]:Vecenti, F., Whipple, A. V., & Gehring, C. A. (2015, October). VARIATION IN STOMATAL TRAITS ASSOCIATED WITH DROUGHT TOLERANT AND INTOLERANT PINYON PINE (PINUS EDULIS). 2015 Research Experiences for Undergraduates Symposium (REUS). National Science Foundation, Arlington, VA: Council on Undergraduate Research. ER - TY - JOUR T1 - Plant genetics and interspecific competitive interactions determine ectomycorrhizal fungal community responses to climate change . JF - Molecular Ecology Y1 - 2013 A1 - CA Gehring A1 - Flores-Rentería,D A1 - CM Sthultz A1 - Leonard,TM A1 - L Flores-Renteria A1 - AV Whipple A1 - TG Whitham VL - 23 N1 - [Original String]:Gehring CA, Flores-Rentería D, Sthultz CM, Leonard TM, Flores-Rentería L, Whipple AV, Whitham TG. 2013. Plant genetics and interspecific competitive interactions determine ectomycorrhizal fungal community responses to climate change . Molecular Ecology 23:1379-1391. ER - TY - JOUR T1 - The relative influences of host plant genotype and yearly abiotic variability in determining herbivore abundance. JF - Oecologia Y1 - 2012 A1 - Evans,Luke M A1 - James S Clark A1 - Whipple,Amy V A1 - Whitham,Thomas G KW - Animals KW - Bayes Theorem KW - Genotype KW - Herbivory KW - Mites KW - Population Density KW - Population Dynamics KW - Populus AB -Both plant genotype and yearly abiotic variation affect herbivore population sizes, but long-term data have rarely been used to contrast the relative contributions of each. Using a hierarchical Bayesian model, we directly compare effects of these two factors on the population size of a common herbivore, Aceria parapopuli, on Populus angustifolia × fremontii F(1) hybrid trees growing in a common garden across 8 years. Several patterns emerged. First, the Bayesian posterior estimates of tree genotype effects on mite gall number ranged from 0.0043 to 229 on a linear scale. Second, year effect sizes across 8 years of study ranged from 0.133 to 1.895. Third, in comparing the magnitudes of genotypic versus yearly variation, we found that genotypic variation was over 130 times greater than variation among years. Fourth, precipitation in the previous year negatively affected gall abundances, but was minimal compared to tree genotype effects. These findings demonstrate the relative importance of tree genotypic variation in determining herbivore population size. However, given the demonstrated sensitivity of cottonwoods to drought, the loss of individual tree genotypes from an altered climate would have catastrophic impacts on mites that are dependent upon these genotypes for their survival.
VL - 168 SN - 0029-8549 UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=21918874&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 2 ER -