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Remke, M. J. 2019. Getting to the Root of Change: How Plants Respont to Novel Climates, Soils, and Soil Biota. Northern Arizona University Flagstaff, Arizona, USA.

Flores-Rentería, L., A. V.  Whipple, G. J.  Benally, A. M.  Patterson, B.  Canyon, and C. A.  Gehring. 2018. High temperature at lower elevation sites fails to promote acclimation or adaptation to heat stress during pollen germination. . Frontiers in Plant Science 9.

Menon, M., J. C.  Bagley, C. J.  Friedline, A. V.  Whipple, A. W.  Schoettle, A.  Leal-Senz, C.  Wehenkel, F.  Molina-Freaner, L.  Flores-Renter3?a, S.  M. Gonzalez-Elizondo, R. A.  Sniezko, S. A.  Cushman, K. M.  Waring, and A. J.  Eckert. 2018. The role of hybridization during ecological divergence of southwestern white pine (Pinus strobiformis) and limber pine (P. flexilis). Molecular Ecology 27:1245-1260.

Jarvis, K. J., G. J.  Allan, A. J.  Craig, R. K.  Beresic-Perrins, G.  Wimp, C. A.  Gehring, and T. G.  Whitham. 2017. Arthropod communities on hybrid and parental cottonwoods are phylogenetically structured by tree type: Implications for conservation of biodiversity in plant hybrid zones.. Ecology and evolution 7:5909 - 5921.

Jarvis, K. J., G. J.  Allan, A. J.  Craig, R. K.  Beresic-Perrins, G.  Wimp, C. A.  Gehring, and T. G.  Whitham. 2017. Arthropod communities on hybrid and parental cottonwoods are phylogenetically structured by tree type: Implications for conservation of biodiversity in plant hybrid zones.  . Ecology and Evolution 7.

Waring, K., S.  Cushman, A.  Eckert, L.  Flores-Renteria, R.  Sniezko, S.  Still, C.  Wehenkel, A. V.  Whipple, M.  Wing, E.  Boes, E.  Bucholz, J.  Burnett, A.  Castilla, J.  DaBell, C.  Friedline, C.  Garms, E.  Heck, J.  Johnson, A.  Leal-Saenz, B.  McTeague, M.  Menon, and E.  Moler. 2017. Blending Ecology and Evolution using Emerging Technologies to Determine Species Distributions with a Non-native Pathogen in a Changing Climate.. in  Forest Regeneration in Changing Climates. Corvallis, OR.

Keith, A. R., J. K.  Bailey, M. K.  Lau, and T. G.  Whitham. 2017. Genetics-based interactions of foundation species affect community diversity, stability and network structure.. Proceedings of the Royal Society B Biological .. 284.

Whitham, T. G., C. A.  Gehring, H. M.  Bothwell, H. F.  Cooper, J. B.  Hull, G. J.  Allan, K. C.  Grady, L.  Markovchick, S. M.  Shuster, J.  Parker, A. E.  Cadmus, D. H.  Ikeda, and R. K.  Bangert. 2017. IN PRESS: Using the Southwest Experimental Garden Array to enhance riparian restoration in response to global change: Identifying and deploying genotypes and populations for current and future environments.  . in  In Riparian research and management: Past, present, future. . Gen. Tech. Rep. RMRS-GTR-inpress Fort Collins U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station.Fort Collins, CO, USA.

Munson, S. M., E.  Bunting, J. B.  Bradford, B. J.  Butterfield, and . 2017. IN REVIEW: Plant production responses to precipitation differ along an elevation gradient and are enhanced under extremes.. Oecologia.

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Compson, Z. G., T. G.  Hungate, N.  Whitham, P. E.  Meneses, T.  Busby, A. C.  Wojtowicz, K. J.  Ford, and J. C.  Marks. 2016. B.A. Adams, and Plant genotype influences aquatic-terrestrial ecosystem linkages through timing and composition of insect emergence.. ECOSPHERE   e01331 101002ecs21331 DOI 101002ecs21331 7.

Butterfield, B. J., A. L.  Camhi, R. L.  Rubin, and C. R.  Schwalm. 2016. Chapter Five ? Tradeoffs and Compatibilities Among Ecosystem Services : Biological, Physical and Economic Drivers of Multifunctionality. Advances in Ecological Research 54:207 - 243.

Butterfield, B. J., J.  Bradford, C.  Armas, I.  Prieto, and F. I.  Pugnaire. 2016. Does the stress gradient hypothesis hold water? An assessment of vegetation effects on soil moisture and implications for plant-plant interactions.. Functional Ecology 30:10 - 19.

Lau, M. K., A. R.  Keith, S. R.  Borrett, S. M.  Shuster, and T. G.  Whitham. 2016. Genotypic variation in foundation species generates network structure that may drive community dynamics and evolution.. Ecology 97:733 - 42.

Fischer, D. G., E.  Wimp, R. K.  Hersch-Green, C. J.  Bangert, J. K.  LeRoy, J. A.  Bailey, C.  Schweitzer, S. C.  Dirks, G. J.  Hart, and T. G.  Whitham. 2016. G.M. Allan, and Tree genetics strongly effect forest productivity, but intraspecific diversity-productivity relationships do not.. FUNCTIONAL ECOLOGY  DOI 1011111365243512733 31:520 - 529.

Clark, J. S., L.  Iverson, C. W.  Woodall, C. D.  Allen, D. M.  Bell, D. C.  Bragg, A. W.  D'Amato, F. W.  Davis, M. H.  Hersh, I.  Ibanez, S. T.  Jackson, S.  Matthews, N.  Pederson, M.  Peters, M. W.  Schwartz, K. M.  Waring, and N. E.  Zimmermann. 2016. The impacts of increasing drought on forest dynamics, structure, and biodiversity in the United States.. Global change biology 22:2329 - 52.

Flathers, K. N., T. E.  Kolb, J. B.  Bradford, K. M.  Waring, and W. K.  Moser. 2016. Long-term thinning alters ponderosa pine reproduction in northern Arizona.. Forest Ecology and Management 374:154 - 165.

Butterfield, B. J., S. M.  Copeland, S. M.  Munson, C. M.  Roybal, and T. E.  Wood. 2016. Prestoration: Using species in restoration that will persist now and into the future.. Restoration Ecology.

Petrie, M. D., A. M.  Wildeman, J. B.  Bradford, R. M.  Hubbard, and W. K.  Lauenroth. 2016. A review of precipitation and temperature control on seedling emergence and establishment for ponderosa and lodgepole pine forest regeneration.. Forest Ecology and Management 361:328 - 338.

Butterfield, B. J., and S. M.  Munson. 2016. Temperature is better than precipitation as a predictor of plant community assembly across a dryland region.. Journal of Vegetation Science 27:938 - 947.

Barak, R. S., J. B.  Fant, A. T.  Kramer, and K. A.  Skogen. 2015. Assessing the value of potential ?native winners? for restoration of cheatgrass-invaded habitat.. Western North American Naturalist 75:58 - 69.

Butterfield, B. J., and T. E.  Wood. 2015. Local climate and cultivation, but not ploidy, predict functional trait variation in Bouteloua gracilis (Poaceae).. Plant Ecology 216:1341 - 1349.

Hultine, K. R., D. W.  Bean, T. L.  Dudley, and C. A.  Gehring. 2015. Species Introductions and Their Cascading Impacts on Biotic Interactions in desert riparian ecosystems.. Integrative and comparative biology 55:587 - 601.

Ikeda, D. H., H. M.  Bothwell, M. K.  Lau, G. A.  O?Neill, K. C.  Grady, and T. G.  Whitham. 2014. A genetics-based universal community transfer function for predicting the impacts of climate change on future communities.. Functional Ecology 28:65 - 74.

Ghosh, S., D. M.  Bell, J. S.  Clark, A. E.  Gelfand, and P.  Flikkema. 2014. Process Modeling for Soil Moisture Using Sensor Network Data .. Statistical Methodology (Special issue on modern statistical methods in ecology) 12:99 - 112.

Busby, P. E., G.  Newcombe, R.  Dirzo, and T. G.  Whitham. 2013. Genetic basis of pathogen community structure for foundation tree species in a common garden and in the wild .. Journal of Ecology 101:867 - 877.

Holeski, L. M., K.  Keefover-Ring, D.  M Bowers, Z. T.  Harnenz, and R. L.  Lindroth. 2013. Patterns of phytochemical variation in Mimulus guttatus (yellow monkeyflower).. Journal of chemical ecology 39:525 - 36.

Bangert, R. K., S. M.  Ferrier, L.  Evans, K.  Kennedy, and K. C.  Grady. 2013. The Proportion of Three Foundation Plant Species and Their Genotypes Influence an Arthropod Community: Restoration Implications for the Endangered Southwes... Restoration Ecology 21:447 - 456.

Bailey, J. K., J. A.  Schweitzer, B. M.  Fitzpatrick, M. A.  Genung, C. C.  Pregitzer, M.  Zinkgraf, T. G.  Whitham, A.  Keith, J. M.  Reilly-Wapstra, B. M.  Potts, B. J.  Rehill, C. J.  LeRoy, D. G.  Fischer, G. R.  Iason, M.  Dicke, and S. E.  Hartley. 2012. From genes to ecosystems: emerging concepts bridging ecological and evolutionary dynamics.. 269 - 286  (G. R.  Iason, Dicke, M., and Hartley, S. E., Eds.). Cambridge University PressNew York.

Lojewski, N. R., D. G.  Fischer, J. K.  Bailey, J. A.  Schweitzer, T. G.  Whitham, and S. C.  Hart. 2012. Genetic components to belowground carbon fluxes in a riparian forest ecosystem: a common garden approach.. The New phytologist 195:631 - 9.

Smith, D. S., J. A.  Schweitzer, P.  Turk, J. K.  Bailey, S. C.  Hart, S. M.  Shuster, and T. G.  Whitham. 2012. Soil-mediated local adaptation alters seedling survival and performance .. Plant and Soil 352:243 - 251.

Flikkema, P. G., K. R.  Yamamoto, S.  Boegli, C.  Porter, and P. L.  Heinrich. 2012. Towards Cyber-Eco Systems: Networked Sensing, Inference and Control for Distributed Ecological Experiments. in  IEEE International Conference on Cyber, Physical and Social Computing.

Ferrier, S. M., R. K.  Bangert, E. I.  Hersch-Green, J. K.  Bailey, and G. J.  Allan. 2012. Unique arthropod communities on different host-plant genotypes results in greater arthropod diversity. Arthropod-Plant Interactions 6:187 - 195.

Lamit, L. J., M. A.  Bowker, L. M.  Holeski, R. R.  Næsborg, S. C.  Wooley, M.  Zinkgraf, R. L.  Lindroth, T. G.  Whitham, and C. A.  Gehring. 2011. Genetically-based trait variation within a foundation tree species influences a dominant bark lichen .. Fungal Ecology 4:103 - 109.

Smith, D. S., J. K.  Bailey, S. M.  Shuster, and T. G.  Whitham. 2011. A geographic mosaic of trophic interactions and selection: trees, aphids and birds. Journal of Evolutionary Biology 24:422 - 429.

Clark, J. S., P.  Agarwal, D. M.  Bell, P. G.  Flikkema, A.  Gelfand, X.  Nguyen, E.  Ward, and J.  Yang. 2011. Inferential ecosystem models, from network data to prediction.. Ecological applications : a publication of the Ecological Society of America 21:1523 - 36.

Wu, Z., G. W.  Koch, P.  Dijkstra, M. A.  Bowker, and B.  Hungate. 2011. Responses of ecosystem carbon cycling to climate change treatments along an elevation gradient. Ecosystems 14:1066 - 1080.

Bridgeland, W. T., P.  Beier, T.  Kolb, and T. G.  Whitham. 2010. A conditional trophic cascade: birds benefit faster growing trees with strong links between predators and plants.. Ecology 91:73 - 84.

Keith, A. R., J. K.  Bailey, and T. G.  Whitham. 2010. A genetic basis to community repeatability and stability.. Ecology 91:3398 - 406.

Bailey, J. K., J. A.  Schweitzer, F.  Ubeda, J.  Koricheva, C. J.  LeRoy, M. D.  Madritch, B. J.  Rehill, R. K.  Bangert, D. G.  Fischer, G. J.  Allan, and T. G.  Whitham. 2009. From genes to ecosystems: a synthesis of the effects of plant genetic factors across levels of organization.. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 364:1607 - 16.

Lojewski, N. R., D. G.  Fischer, J. K.  Bailey, J. A.  Schweitzer, T. G.  Whitham, and S. C.  Hart. 2009. Genetic basis of aboveground productivity in two native Populus species and their hybrids.. Tree physiology 29:1133 - 42.

Barbour, R. C., J. M.  O'Reilly-Wapstra, D. W.  De Little, G. J.  Jordan, D. A.  Steane, J. R.  Humphreys, J. K.  Bailey, T. G.  Whitham, and B. M.  Potts. 2009. A geographic mosaic of genetic variation within a foundation tree species and its community-level consequences.. Ecology 90:1762 - 72.

Whitham, T. G., S. P.  DiFazio, J. A.  Schweitzer, S. M.  Shuster, G. J.  Allan, J. K.  Bailey, and S. A.  Woolbright. 2008. Extending genomics to natural communities and ecosystems.. Science 320:492 - 5.

Schweitzer, J. A., M. D.  Madritch, J. K.  Bailey, C. J.  LeRoy, D. G.  Fischer, B. J.  Rehill, R. L.  Lindroth, A. E.  Hagerman, S. C.  Wooley, S. C.  Hart, and T. G.  Whitham. 2008. From genes to ecosystems: the genetic basis of condensed tannins and their role in nutrient regulation in a Populus model system .. Ecosystems 11:1005 - 1020.

Bangert, R. K., E. V.  Lonsdorf, G. M.  Wimp, S. M.  Shuster, D.  Fischer, J. A.  Schweitzer, G. J.  Allan, J. K.  Bailey, and T. G.  Whitham. 2008. Genetic structure of a foundation species: scaling community phenotypes from the individual to the region.. Heredity 100:121 - 31.

Schweitzer, J. A., J. K.  Bailey, D. G.  Fischer, C. J.  LeRoy, E. V.  Lonsdorf, T. G.  Whitham, and S. C.  Hart. 2008. Plant-soil microorganism interactions: heritable relationship between plant genotype and associated soil microorganisms.. Ecology 89:773 - 81.

Whitham, T. G., and R. K.  Bangert. 2007. Genetic assembly rules and community phenotypes. Evolutionary Ecology 21:549 - 560.

Wimp, G. M., S.  Wooley, R. K.  Bangert, W. P.  Young, G. D.  Martinsen, P.  Keim, B.  Rehill, R. L.  Lindroth, and T. G.  Whitham. 2007. Plant genetics predicts intra-annual variation in phytochemistry and arthropod community structure.. Molecular ecology 16:5057 - 69.

Shuster, S. M., E. V.  Lonsdorf, G. M.  Wimp, J. K.  Bailey, and T. G.  Whitham. 2006. Community heritability measures the evolutionary consequences of indirect genetic effects on community structure.. Evolution; international journal of organic evolution 60:991 - 1003.

Rehill, B. J., T. G.  Whitham, G. D.  Martinsen, J. A.  Schweitzer, J. K.  Bailey, and R. L.  Lindroth. 2006. Developmental trajectories in cottonwood phytochemistry.. Journal of chemical ecology 32:2269 - 85.

Whitham, T. G., J. K.  Bailey, J. A.  Schweitzer, S. M.  Shuster, R. K.  Bangert, C. J.  LeRoy, E. V.  Lonsdorf, G. J.  Allan, S. P.  DiFazio, B. M.  Potts, D. G.  Fischer, C. A.  Gehring, R. L.  Lindroth, J. C.  Marks, S. C.  Hart, G. M.  Wimp, and S. C.  Wooley. 2006. A framework for community and ecosystem genetics: from genes to ecosystems.. Nature reviews. Genetics 7:510 - 23.

Bangert, R. K., G. J.  Allan, R. J.  Turek, G. M.  Wimp, N.  Meneses, G. D.  Martinsen, P.  Keim, and T. G.  Whitham. 2006. From genes to geography: a genetic similarity rule for arthropod community structure at multiple geographic scales.. Molecular ecology 15:4215 - 28.

Bailey, J. K., S. C.  Wooley, R. L.  Lindroth, and T. G.  Whitham. 2006. Importance of species interactions to community heritability: a genetic basis to trophic-level interactions.. Ecology letters 9:78 - 85.