Patterson, A. M., L.  Flores-Rentería, A. V.  Whipple, T. G.  Whitham, and C. A.  Gehring. 2018. Common garden experiments disentangle plant genetic and environmental contributions to ectomycorrhizal fungal community structure.. New Phytologist 221.

Jarvis, K. J., G. J.  Allan, A. J.  Craig, R. K.  Beresic-Perrins, G.  Wimp, C. A.  Gehring, and T. G.  Whitham. 2017. Arthropod communities on hybrid and parental cottonwoods are phylogenetically structured by tree type: Implications for conservation of biodiversity in plant hybrid zones.. Ecology and evolution 7:5909 - 5921.

Jarvis, K. J., G. J.  Allan, A. J.  Craig, R. K.  Beresic-Perrins, G.  Wimp, C. A.  Gehring, and T. G.  Whitham. 2017. Arthropod communities on hybrid and parental cottonwoods are phylogenetically structured by tree type: Implications for conservation of biodiversity in plant hybrid zones.  . Ecology and Evolution 7.

Keith, A. R., J. K.  Bailey, M. K.  Lau, and T. G.  Whitham. 2017. Genetics-based interactions of foundation species affect community diversity, stability and network structure.. Proceedings of the Royal Society B Biological .. 284.

Whitham, T. G., C. A.  Gehring, H. M.  Bothwell, H. F.  Cooper, J. B.  Hull, G. J.  Allan, K. C.  Grady, L.  Markovchick, S. M.  Shuster, J.  Parker, A. E.  Cadmus, D. H.  Ikeda, and R. K.  Bangert. 2017. IN PRESS: Using the Southwest Experimental Garden Array to enhance riparian restoration in response to global change: Identifying and deploying genotypes and populations for current and future environments.  . in  In Riparian research and management: Past, present, future. . Gen. Tech. Rep. RMRS-GTR-inpress Fort Collins U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station.Fort Collins, CO, USA.

Grady, K. C., T. E.  Wood, T. E.  Kolb, E.  Hersch-Green, S. M.  Shuster, C. A.  Gehring, S. C.  Hart, G. J.  Allan, and T. G.  Whitham. 2017. Local biotic adaptation of trees and shrubs to plant neighbors.  . Okios 126.

Whitham, T. G. 2017. The reality of climate change and the need for genetics approaches in riparian, river and watershed restoration to maintain biodiversity in changing environments.. 22 - 27 in B. E.  Ralston and Sarr, D. A.. U.S. Geological Survey Open-File Report 2017-1091.

Gehring, C. A., C. M.  Sthultz, L.  Flores-Rentería, A. V.  Whipple, and T. G.  Whitham. 2017. Tree genetics defines fungal partner communities that may confer drought tolerance. . PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES 114.

Evans, L. M., S.  Kaluthota, D. W.  Pearce, G. J.  Allan, K.  Floate, S. B.  Rood, and T. G.  Whitham. 2016. Bud phenology and growth are subject to divergent selection across a latitudinal gradient in Populus angustifolia and impact adaptation across the distributional range and associated arthropods.. Ecology and evolution 6:4565 - 81.

Hultine, K. R., K. C.  Grady, T. E.  Wood, S. M.  Shuster, J. C.  Stella, and T. G.  Whitham. 2016. Climate change perils for dioecious plant species.. Nature Plant  16109 109.

Zinkgraf, M. S., N.  Meneses, T. G.  Whitham, and G. J.  Allan. 2016. Genetic variation in NIN1 and C/VIF1 genes is significantly associated with Populus angustifolia resistance to a galling herbivore, Pemphigus betae.. Journal of insect physiology 84:50 - 59.

Ikeda, D. H., T. L.  Max, G. J.  Allan, M. K.  Lau, S. M.  Shuster, and T. G.  Whitham. 2016. Genetically informed ecological niche models improve climate change predictions. Global Change Biology.

Lau, M. K., A. R.  Keith, S. R.  Borrett, S. M.  Shuster, and T. G.  Whitham. 2016. Genotypic variation in foundation species generates network structure that may drive community dynamics and evolution.. Ecology 97:733 - 42.

Fischer, D. G., E.  Wimp, R. K.  Hersch-Green, C. J.  Bangert, J. K.  LeRoy, J. A.  Bailey, C.  Schweitzer, S. C.  Dirks, G. J.  Hart, and T. G.  Whitham. 2016. G.M. Allan, and Tree genetics strongly effect forest productivity, but intraspecific diversity-productivity relationships do not.. FUNCTIONAL ECOLOGY  DOI 1011111365243512733 31:520 - 529.

Floate, K. D., J.  Godbout, M. K.  Lau, N.  Isabel, and T. G.  Whitham. 2016. Plant-herbivore interactions in a trispecific hybrid swarm of Populus: assessing support for hypotheses of hybrid bridges, evolutionary novelty and genetic similarity.. The New phytologist 209:832 - 44.

Redmond, M., P.  Weisberg, N. S.  Cobb, C. A.  Gehring, A. V.  Whipple, and T. G.  Whitham. 2016. A robust method to determine historical annual cone production among slow-growing conifers.. Canadian Journal of Forest Research 398:1 - 6.

Lamit, L. J., L. M.  Holeski, L.  Flores-Renteria, T. G.  Whitham, and C. A.  Gehring. 2016. Tree genotype influences ectomycorrhizal fungal community structure: Ecological and evolutionary implications. FUNGAL ECOLOGY 24:124 - 134.

Lamit, L. J., L. M.  Holeski, L.  Flores-Rentería, T. G.  Whitham, and C. A.  Gehring. 2016. Tree genotype influences ectomycorrhizal fungal community structure: ecological and evolutionary implications. . Fungal Ecology 24.

Ikeda, D. H., H. M.  Bothwell, M. K.  Lau, G. A.  O?Neill, K. C.  Grady, and T. G.  Whitham. 2014. A genetics-based universal community transfer function for predicting the impacts of climate change on future communities.. Functional Ecology 28:65 - 74.

Grady, K. C., D. C.  Laughlin, S. M.  Ferrier, T. E.  Kolb, S. C.  Hart, G. J.  Allan, and T. G.  Whitham. 2013. Conservative leaf economic traits correlate with fast growth of genotypes of a foundation riparian species near the thermal maximum extent of its geographic range .. Functional Ecology 27:427 - 438.

Busby, P. E., G.  Newcombe, R.  Dirzo, and T. G.  Whitham. 2013. Genetic basis of pathogen community structure for foundation tree species in a common garden and in the wild .. Journal of Ecology 101:867 - 877.

Compson, Z. G., K. J.  Adams, J. A.  Edwards, J. M.  Maestas, T. G.  Whitham, and J. C.  Marks. 2013. Leaf litter quality affects aquatic insect emergence: contrasting patterns from two foundation trees.. Oecologia 173:507 - 19.

Gehring, C. A., D.  Flores-Rentería, C. M.  Sthultz, T. M.  Leonard, L.  Flores-Renteria, A. V.  Whipple, and T. G.  Whitham. 2013. Plant genetics and interspecific competitive interactions determine ectomycorrhizal fungal community responses to climate change .. Molecular Ecology 23:1379 - 1391.

Whitham, T. G., C. A.  Gehring, L. J.  Lamit, T.  Wojtowicz, L. M.  Evans, A. R.  Keith, and D. Solance Smith. 2012. Community specificity: life and afterlife effects of genes.. Trends in plant science 17:271 - 81.

Bailey, J. K., J. A.  Schweitzer, B. M.  Fitzpatrick, M. A.  Genung, C. C.  Pregitzer, M.  Zinkgraf, T. G.  Whitham, A.  Keith, J. M.  Reilly-Wapstra, B. M.  Potts, B. J.  Rehill, C. J.  LeRoy, D. G.  Fischer, G. R.  Iason, M.  Dicke, and S. E.  Hartley. 2012. From genes to ecosystems: emerging concepts bridging ecological and evolutionary dynamics.. 269 - 286  (G. R.  Iason, Dicke, M., and Hartley, S. E., Eds.). Cambridge University PressNew York.

Lojewski, N. R., D. G.  Fischer, J. K.  Bailey, J. A.  Schweitzer, T. G.  Whitham, and S. C.  Hart. 2012. Genetic components to belowground carbon fluxes in a riparian forest ecosystem: a common garden approach.. The New phytologist 195:631 - 9.

Holeski, L. M., M. L.  Hillstrom, T. G.  Whitham, and R. L.  Lindroth. 2012. Relative importance of genetic, ontogenetic, induction, and seasonal variation in producing a multivariate defense phenotype in a foundation tree species.. Oecologia 170:695 - 707.

Evans, L. M., J. S.  Clark, A. V.  Whipple, and T. G.  Whitham. 2012. The relative influences of host plant genotype and yearly abiotic variability in determining herbivore abundance.. Oecologia 168:483 - 9.

Smith, D. S., J. A.  Schweitzer, P.  Turk, J. K.  Bailey, S. C.  Hart, S. M.  Shuster, and T. G.  Whitham. 2012. Soil-mediated local adaptation alters seedling survival and performance .. Plant and Soil 352:243 - 251.

Wymore, A. S., A. T. H.  Keeley, K. M.  Yturralde, M. L.  Schroer, C. R.  Propper, and T. G.  Whitham. 2011. Genes to ecosystems: exploring the frontiers of ecology with one of the smallest biological units.. The New phytologist 191:19 - 36.

Compson, Z. G., K. C.  Larson, M. S.  Zinkgraf, and T. G.  Whitham. 2011. A genetic basis for the manipulation of sink-source relationships by the galling aphid Pemphigus batae.. Oecologia 167:711 - 21.

Grady, K. C., S. M.  Ferrier, T. E.  Kolb, S. C.  Hart, G. A.  Allan, and T. G.  Whitham. 2011. Genetic variation in productivity of foundation riparian species at the edge of their distribution: implications for restoration and assisted migration in a warming climate .. Global Change Biology 17:3724 - 3735.

Lamit, L. J., M. A.  Bowker, L. M.  Holeski, R. R.  Næsborg, S. C.  Wooley, M.  Zinkgraf, R. L.  Lindroth, T. G.  Whitham, and C. A.  Gehring. 2011. Genetically-based trait variation within a foundation tree species influences a dominant bark lichen .. Fungal Ecology 4:103 - 109.

Smith, D. S., J. K.  Bailey, S. M.  Shuster, and T. G.  Whitham. 2011. A geographic mosaic of trophic interactions and selection: trees, aphids and birds. Journal of Evolutionary Biology 24:422 - 429.

Axelsson, E. P., J.  Hjältén, T. G.  Whitham, R.  Julkunen-Tiitto, and G.  Pilate. 2011. Leaf ontogeny interacts with Bt modification to affect innate resistance in GM aspens. Chemoecology 21:161 - 169.

Michalet, R., S.  Xiao, B.  Touzard, D. S.  Smith, L. A.  Cavieres, R. M.  Callaway, and T. G.  Whitham. 2011. Phenotypic variation in nurse traits and community feedbacks define an alpine community.. Ecology letters 14:433 - 43.

Bridgeland, W. T., P.  Beier, T.  Kolb, and T. G.  Whitham. 2010. A conditional trophic cascade: birds benefit faster growing trees with strong links between predators and plants.. Ecology 91:73 - 84.

Keith, A. R., J. K.  Bailey, and T. G.  Whitham. 2010. A genetic basis to community repeatability and stability.. Ecology 91:3398 - 406.

Bailey, J. K., J. A.  Schweitzer, F.  Ubeda, J.  Koricheva, C. J.  LeRoy, M. D.  Madritch, B. J.  Rehill, R. K.  Bangert, D. G.  Fischer, G. J.  Allan, and T. G.  Whitham. 2009. From genes to ecosystems: a synthesis of the effects of plant genetic factors across levels of organization.. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 364:1607 - 16.

Marks, J. C., G. A.  Haden, B. A.  Harrop, E. G.  Reese, J. L.  Keams, M. E.  Watwood, and T. G.  Whitham. 2009. Genetic and environmental controls of microbial communities on leaf litter in streams .. Freshwater Biology 54:2616 - 2627.

Lojewski, N. R., D. G.  Fischer, J. K.  Bailey, J. A.  Schweitzer, T. G.  Whitham, and S. C.  Hart. 2009. Genetic basis of aboveground productivity in two native Populus species and their hybrids.. Tree physiology 29:1133 - 42.

Sthultz, C. M., T. G.  Whitham, K.  Kennedy, R.  Deckert, and C. A.  Gehring. 2009. Genetically based susceptibility to herbivory influences the ectomycorrhizal fungal communities of a foundation tree species.. The New phytologist 184:657 - 67.

Barbour, R. C., J. M.  O'Reilly-Wapstra, D. W.  De Little, G. J.  Jordan, D. A.  Steane, J. R.  Humphreys, J. K.  Bailey, T. G.  Whitham, and B. M.  Potts. 2009. A geographic mosaic of genetic variation within a foundation tree species and its community-level consequences.. Ecology 90:1762 - 72.

Holeski, L. M., M. J. C.  Kearsley, and T. G.  Whitham. 2009. Separating ontogenetic and environmental determination of resistance to herbivory in cottonwood.. Ecology 90:2969 - 73.

Woolbright, S. A., S. P.  Difazio, T.  Yin, G. D.  Martinsen, X.  Zhang, G. J.  Allan, T. G.  Whitham, and P.  Keim. 2008. A dense linkage map of hybrid cottonwood (Populus fremontii x P. angustifolia) contributes to long-term ecological research and comparison mapping in a model forest tree.. Heredity 100:59 - 70.

Whitham, T. G., S. P.  DiFazio, J. A.  Schweitzer, S. M.  Shuster, G. J.  Allan, J. K.  Bailey, and S. A.  Woolbright. 2008. Extending genomics to natural communities and ecosystems.. Science 320:492 - 5.

Schweitzer, J. A., M. D.  Madritch, J. K.  Bailey, C. J.  LeRoy, D. G.  Fischer, B. J.  Rehill, R. L.  Lindroth, A. E.  Hagerman, S. C.  Wooley, S. C.  Hart, and T. G.  Whitham. 2008. From genes to ecosystems: the genetic basis of condensed tannins and their role in nutrient regulation in a Populus model system .. Ecosystems 11:1005 - 1020.

Bangert, R. K., E. V.  Lonsdorf, G. M.  Wimp, S. M.  Shuster, D.  Fischer, J. A.  Schweitzer, G. J.  Allan, J. K.  Bailey, and T. G.  Whitham. 2008. Genetic structure of a foundation species: scaling community phenotypes from the individual to the region.. Heredity 100:121 - 31.

Schweitzer, J. A., J. K.  Bailey, D. G.  Fischer, C. J.  LeRoy, E. V.  Lonsdorf, T. G.  Whitham, and S. C.  Hart. 2008. Plant-soil microorganism interactions: heritable relationship between plant genotype and associated soil microorganisms.. Ecology 89:773 - 81.

Evans, L. M., G. J.  Allan, S. M.  Shuster, S. A.  Woolbright, and T. G.  Whitham. 2008. Tree hybridization and genotypic variation drive cryptic speciation of a specialist mite herbivore.. Evolution; international journal of organic evolution 62:3027 - 40.

Whitham, T. G., and R. K.  Bangert. 2007. Genetic assembly rules and community phenotypes. Evolutionary Ecology 21:549 - 560.

Classen, A. T., S. K.  Chapman, T. G.  Whitham, S. C.  Hart, and G. W.  Koch. 2007. Genetic?based plant resistance and susceptibility traits to herbivory influence needle and root litter nutrient dynamics. Journal of Ecology 95.

Wimp, G. M., and T. G.  Whitham. 2007. Host plants mediate ant-aphid mutualisms and their effects on community structure and diversity. 275 - 305 in T.  Ohgushi, Craig, T. P., and Price, P. W. Ecological communities: plant mediation in indirect interaction webs. Cambridge University PressNew York, NY, USA.

Wimp, G. M., S.  Wooley, R. K.  Bangert, W. P.  Young, G. D.  Martinsen, P.  Keim, B.  Rehill, R. L.  Lindroth, and T. G.  Whitham. 2007. Plant genetics predicts intra-annual variation in phytochemistry and arthropod community structure.. Molecular ecology 16:5057 - 69.

LeRoy, C. J., T. G.  Whitham, S. C.  Wooley, and J. C.  Marks. 2007. Within-species variation in foliar chemistry influences leaf-litter decomposition in a Utah river .. Journal of The North American Benthological Society 26:426 - 438.

Shuster, S. M., E. V.  Lonsdorf, G. M.  Wimp, J. K.  Bailey, and T. G.  Whitham. 2006. Community heritability measures the evolutionary consequences of indirect genetic effects on community structure.. Evolution; international journal of organic evolution 60:991 - 1003.

Rehill, B. J., T. G.  Whitham, G. D.  Martinsen, J. A.  Schweitzer, J. K.  Bailey, and R. L.  Lindroth. 2006. Developmental trajectories in cottonwood phytochemistry.. Journal of chemical ecology 32:2269 - 85.

Fischer, F. G., S. C.  Hart, B. J.  Rehill, R. L.  Lindroth, P.  Keim, and T. Gand Whitham. 2006. Do high-tannin leaves require more roots?. Oecologia 149:668 - 75.

Gehring, C. A., R. C.  Mueller, and T. G.  Whitham. 2006. Environmental and genetic effects on the formation of ectomycorrhizal and arbuscular mycorrhizal associations in cottonwoods.. Oecologia 149:158 - 64.

Whitham, T. G., J. K.  Bailey, J. A.  Schweitzer, S. M.  Shuster, R. K.  Bangert, C. J.  LeRoy, E. V.  Lonsdorf, G. J.  Allan, S. P.  DiFazio, B. M.  Potts, D. G.  Fischer, C. A.  Gehring, R. L.  Lindroth, J. C.  Marks, S. C.  Hart, G. M.  Wimp, and S. C.  Wooley. 2006. A framework for community and ecosystem genetics: from genes to ecosystems.. Nature reviews. Genetics 7:510 - 23.

Bangert, R. K., G. J.  Allan, R. J.  Turek, G. M.  Wimp, N.  Meneses, G. D.  Martinsen, P.  Keim, and T. G.  Whitham. 2006. From genes to geography: a genetic similarity rule for arthropod community structure at multiple geographic scales.. Molecular ecology 15:4215 - 28.

Bailey, J. K., S. C.  Wooley, R. L.  Lindroth, and T. G.  Whitham. 2006. Importance of species interactions to community heritability: a genetic basis to trophic-level interactions.. Ecology letters 9:78 - 85.