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Whipple, A. V., and L. M. Holeski. 2016. Epigenetic Inheritance across the Landscape.. Frontiers in genetics 7:189.

Whitham, T. G., S. P. DiFazio, J. A. Schweitzer, S. M. Shuster, G. J. Allan, J. K. Bailey, and S. A. Woolbright. 2008. Extending genomics to natural communities and ecosystems.. Science 320:492 - 5.

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Whitham, T. G., J. K. Bailey, J. A. Schweitzer, S. M. Shuster, R. K. Bangert, C. J. LeRoy, E. V. Lonsdorf, G. J. Allan, S. P. DiFazio, B. M. Potts, D. G. Fischer, C. A. Gehring, R. L. Lindroth, J. C. Marks, S. C. Hart, G. M. Wimp, and S. C. Wooley. 2006. A framework for community and ecosystem genetics: from genes to ecosystems.. Nature reviews. Genetics 7:510 - 23.

Flikkema, P. G., P. K. Agarwal, J. S. Clark, C. Ellis, and A. Gelfand. 2007. From Data Reverence to Data Relevance: Model-Mediated Wireless Sensing of the Physical Environment. 988 - 994 in G. Albada, Dongarra, J., and Sloot, P. ICCS 2007, 7th International Conference. Springer Berlin/HeidelbergBeijing, China.

Bailey, J. K., J. A. Schweitzer, F. Ubeda, J. Koricheva, C. J. LeRoy, M. D. Madritch, B. J. Rehill, R. K. Bangert, D. G. Fischer, G. J. Allan, and T. G. Whitham. 2009. From genes to ecosystems: a synthesis of the effects of plant genetic factors across levels of organization.. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 364:1607 - 16.

Bailey, J. K., J. A. Schweitzer, B. M. Fitzpatrick, M. A. Genung, C. C. Pregitzer, M. Zinkgraf, T. G. Whitham, A. Keith, J. M. Reilly-Wapstra, B. M. Potts, B. J. Rehill, C. J. LeRoy, D. G. Fischer, G. R. Iason, M. Dicke, and S. E. Hartley. 2012. From genes to ecosystems: emerging concepts bridging ecological and evolutionary dynamics.. 269 - 286 (G. R. Iason, Dicke, M., and Hartley, S. E., Eds.). Cambridge University PressNew York.

Schweitzer, J. A., M. D. Madritch, J. K. Bailey, C. J. LeRoy, D. G. Fischer, B. J. Rehill, R. L. Lindroth, A. E. Hagerman, S. C. Wooley, S. C. Hart, and T. G. Whitham. 2008. From genes to ecosystems: the genetic basis of condensed tannins and their role in nutrient regulation in a Populus model system .. Ecosystems 11:1005 - 1020.

Bangert, R. K., G. J. Allan, R. J. Turek, G. M. Wimp, N. Meneses, G. D. Martinsen, P. Keim, and T. G. Whitham. 2006. From genes to geography: a genetic similarity rule for arthropod community structure at multiple geographic scales.. Molecular ecology 15:4215 - 28.

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Wymore, A. S., A. T. H. Keeley, K. M. Yturralde, M. L. Schroer, C. R. Propper, and T. G. Whitham. 2011. Genes to ecosystems: exploring the frontiers of ecology with one of the smallest biological units.. The New phytologist 191:19 - 36.

Marks, J. C., G. A. Haden, B. A. Harrop, E. G. Reese, J. L. Keams, M. E. Watwood, and T. G. Whitham. 2009. Genetic and environmental controls of microbial communities on leaf litter in streams .. Freshwater Biology 54:2616 - 2627.

Whitham, T. G., and R. K. Bangert. 2007. Genetic assembly rules and community phenotypes. Evolutionary Ecology 21:549 - 560.

Compson, Z. G., K. C. Larson, M. S. Zinkgraf, and T. G. Whitham. 2011. A genetic basis for the manipulation of sink-source relationships by the galling aphid Pemphigus batae.. Oecologia 167:711 - 21.

Lojewski, N. R., D. G. Fischer, J. K. Bailey, J. A. Schweitzer, T. G. Whitham, and S. C. Hart. 2009. Genetic basis of aboveground productivity in two native Populus species and their hybrids.. Tree physiology 29:1133 - 42.

Busby, P. E., G. Newcombe, R. Dirzo, and T. G. Whitham. 2013. Genetic basis of pathogen community structure for foundation tree species in a common garden and in the wild .. Journal of Ecology 101:867 - 877.

Keith, A. R., J. K. Bailey, and T. G. Whitham. 2010. A genetic basis to community repeatability and stability.. Ecology 91:3398 - 406.

Lojewski, N. R., D. G. Fischer, J. K. Bailey, J. A. Schweitzer, T. G. Whitham, and S. C. Hart. 2012. Genetic components to belowground carbon fluxes in a riparian forest ecosystem: a common garden approach.. The New phytologist 195:631 - 9.

Bangert, R. K., E. V. Lonsdorf, G. M. Wimp, S. M. Shuster, D. Fischer, J. A. Schweitzer, G. J. Allan, J. K. Bailey, and T. G. Whitham. 2008. Genetic structure of a foundation species: scaling community phenotypes from the individual to the region.. Heredity 100:121 - 31.

Zinkgraf, M. S., N. Meneses, T. G. Whitham, and G. J. Allan. 2016. Genetic variation in NIN1 and C/VIF1 genes is significantly associated with Populus angustifolia resistance to a galling herbivore, Pemphigus betae.. Journal of insect physiology 84:50 - 59.

Goodrich, B. A., K. M. Waring, and T. E. Kolb. 2016. Genetic variation in Pinus strobiformis growth and drought tolerance from southwestern US populations.. Tree physiology 36:1219 - 1235.

Grady, K. C., S. M. Ferrier, T. E. Kolb, S. C. Hart, G. A. Allan, and T. G. Whitham. 2011. Genetic variation in productivity of foundation riparian species at the edge of their distribution: implications for restoration and assisted migration in a warming climate .. Global Change Biology 17:3724 - 3735.

Sthultz, C. M., T. G. Whitham, K. Kennedy, R. Deckert, and C. A. Gehring. 2009. Genetically based susceptibility to herbivory influences the ectomycorrhizal fungal communities of a foundation tree species.. The New phytologist 184:657 - 67.

Ikeda, D. H., T. L. Max, G. J. Allan, M. K. Lau, S. M. Shuster, and T. G. Whitham. 2016. Genetically informed ecological niche models improve climate change predictions. Global Change Biology.

Lamit, L. J., M. A. Bowker, L. M. Holeski, R. R. Næsborg, S. C. Wooley, M. Zinkgraf, R. L. Lindroth, T. G. Whitham, and C. A. Gehring. 2011. Genetically-based trait variation within a foundation tree species influences a dominant bark lichen .. Fungal Ecology 4:103 - 109.

Keith, A. R., J. K. Bailey, M. K. Lau, and T. G. Whitham. 2017. Genetics-based interactions of foundation species affect community diversity, stability and network structure.. Proceedings of the Royal Society B Biological .. 284.

Ikeda, D. H., H. M. Bothwell, M. K. Lau, G. A. O’Neill, K. C. Grady, and T. G. Whitham. 2014. A genetics-based universal community transfer function for predicting the impacts of climate change on future communities.. Functional Ecology 28:65 - 74.

Classen, A. T., S. K. Chapman, T. G. Whitham, S. C. Hart, and G. W. Koch. 2007. Genetic‐based plant resistance and susceptibility traits to herbivory influence needle and root litter nutrient dynamics. Journal of Ecology 95.

Lau, M. K., A. R. Keith, S. R. Borrett, S. M. Shuster, and T. G. Whitham. 2016. Genotypic variation in foundation species generates network structure that may drive community dynamics and evolution.. Ecology 97:733 - 42.

Barbour, R. C., J. M. O'Reilly-Wapstra, D. W. De Little, G. J. Jordan, D. A. Steane, J. R. Humphreys, J. K. Bailey, T. G. Whitham, and B. M. Potts. 2009. A geographic mosaic of genetic variation within a foundation tree species and its community-level consequences.. Ecology 90:1762 - 72.

Smith, D. S., J. K. Bailey, S. M. Shuster, and T. G. Whitham. 2011. A geographic mosaic of trophic interactions and selection: trees, aphids and birds. Journal of Evolutionary Biology 24:422 - 429.

Remke, M. J. 2019. Getting to the Root of Change: How Plants Respont to Novel Climates, Soils, and Soil Biota. Northern Arizona University Flagstaff, Arizona, USA.

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